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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15440-RA through 18771 annotations produced 1 hits



(CG15440):

Annotation Number : CG15440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031607
Gbrowse : chr2L:4453166-4454457 (-) // 100.0 //
Probeset : 1629144_at
Accessions : protein= NP_608837;, nucleotide= NM_134993;
Pathway : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0031607.
BioGrid reports that CG15440 interacts with CG7049 CG15697 CG1646 CG18069 CG1913 CG7753 CG3052 CG31811 CG3186 CG32392 CG3320 CG3751 CG5271 CG8495 CG8947 CG9853 Dmel CG33956 .
VDRC has 2 RNAi stocks for FBgn0031607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 24 of 4 1.50Up
Head50 ± 04 of 4 1.00None
Eye79 ± 14 of 4 1.64Up
Thoracicoabdominal ganglion86 ± 54 of 4 1.80Up
Salivary gland101 ± 124 of 4 2.08Up
Crop80 ± 34 of 4 1.70Up
Midgut59 ± 44 of 4 1.20None
Tubule50 ± 14 of 4 1.00None
Hindgut65 ± 24 of 4 1.30Up
Heart44 ± 34 of 4 0.92None
Fat body43 ± 13 of 4 0.89Down
Ovary83 ± 14 of 4 1.70Up
Testis73 ± 24 of 4 1.50Up
Male accessory glands112 ± 104 of 4 2.30Up
Virgin spermatheca72 ± 54 of 4 1.49Up
Mated spermatheca82 ± 34 of 4 1.70Up
Adult carcass47 ± 23 of 4 1.00None
Larval CNS136 ± 44 of 4 2.80Up
Larval Salivary gland135 ± 84 of 4 2.77Up
Larval midgut45 ± 44 of 4 0.93None
Larval tubule103 ± 44 of 4 2.10Up
Larval hindgut66 ± 24 of 4 1.37Up
Larval fat body61 ± 94 of 4 1.30None
Larval trachea89 ± 64 of 4 1.84Up
Larval carcass67 ± 24 of 4 1.38Up
S2 cells (growing)138 ± 24 of 4 2.85Up
Whole fly48 ± 14 of 4

Looking for CG15440-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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