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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15445-RB through 18771 annotations produced 1 hits



(CG15445):

Annotation Number : CG15445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031161
Gbrowse : chrX:20988185-20991362 (+) // 100.0 //
Probeset : 1635057_s_at
Accessions : protein= NP_608436; /// NP_728390; /// NP_728391; /// NP_728392;, nucleotide= NM_134592; /// NM_167729; /// NM_167730; /// NM_167731;
FlyMine data for FBgn0031161.
BDGP gene expression has embryonic in situ data for CG15445: 4 pix of staining in 1 body parts.
BioGrid reports that CG15445 interacts with CG5383 .
VDRC has 3 RNAi stocks for FBgn0031161 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 74 of 4 0.90None
Head97 ± 34 of 4 1.00None
Eye86 ± 104 of 4 0.87None
Thoracicoabdominal ganglion77 ± 34 of 4 0.80Down
Salivary gland201 ± 44 of 4 2.03Up
Crop160 ± 64 of 4 1.60Up
Midgut80 ± 54 of 4 0.80Down
Tubule122 ± 154 of 4 1.20None
Hindgut104 ± 54 of 4 1.10None
Heart79 ± 24 of 4 0.80Down
Fat body173 ± 54 of 4 1.74Up
Ovary116 ± 64 of 4 1.20None
Testis267 ± 74 of 4 2.70Up
Male accessory glands244 ± 54 of 4 2.50Up
Virgin spermatheca189 ± 64 of 4 1.91Up
Mated spermatheca198 ± 54 of 4 2.00Up
Adult carcass96 ± 94 of 4 1.00None
Larval CNS131 ± 84 of 4 1.32Up
Larval Salivary gland251 ± 104 of 4 2.53Up
Larval midgut180 ± 84 of 4 1.82Up
Larval tubule176 ± 124 of 4 1.80Up
Larval hindgut145 ± 144 of 4 1.47Up
Larval fat body104 ± 64 of 4 1.10None
Larval trachea124 ± 124 of 4 1.25Up
Larval carcass218 ± 244 of 4 2.20Up
S2 cells (growing)190 ± 24 of 4 1.92Up
Whole fly99 ± 34 of 4

Looking for CG15445-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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