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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1545-RA through 18771 annotations produced 1 hits



(CG1545):

Annotation Number : CG1545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030259
Gbrowse : chrX:10951571-10953627 (-) // 100.0 //
Probeset : 1639176_at
Accessions : protein= NP_572677;, nucleotide= NM_132449;
FlyMine data for FBgn0030259.
BDGP gene expression has embryonic in situ data for CG1545: 4 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0030259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain879 ± 174 of 483.30Up
Head279 ± 114 of 426.50Up
Eye33 ± 34 of 4 3.14Up
Thoracicoabdominal ganglion1126 ± 544 of 4106.80Up
Salivary gland1 ± 00 of 4 0.11Down
Crop20 ± 14 of 4 1.90Up
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.07Down
Fat body1 ± 10 of 4 0.15Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands0 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.11Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass5 ± 30 of 4 0.50None
Larval CNS295 ± 454 of 428.02Up
Larval Salivary gland0 ± 00 of 4 0.07Down
Larval midgut1 ± 00 of 4 0.12Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.26Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 30 of 4 0.25Down
Larval carcass3 ± 00 of 4 0.30Down
S2 cells (growing)1 ± 10 of 4 0.16Down
Whole fly10 ± 12 of 4

Looking for CG1545-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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