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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15450-RA through 18771 annotations produced 1 hits


(CG15450):

Annotation Number : CG15450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031132
Gbrowse : chrX:20693172-20696673 (+) // 100.0 //
Probeset : 1626957_at
Accessions : protein= NP_608409;, nucleotide= NM_134565;
Interpro : 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0031132.
BioGrid reports that CG15450 interacts with CG3401 CG9638 .
VDRC has 2 RNAi stocks for FBgn0031132 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.15Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.20Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis269 ± 24 of 411.70Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca2 ± 00 of 4 0.09Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut1 ± 10 of 4 0.07Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body52 ± 153 of 4 2.30None
Larval trachea0 ± 00 of 4 0.03Down
Larval carcass2 ± 10 of 4 0.13Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly23 ± 22 of 4

Looking for CG15450-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime