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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15478-RA through 18771 annotations produced 1 hits


Annotation Number : CG15478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029955
Gbrowse : chrX:7606817-7611961 (-) // 100.0 //
Probeset : 1623860_at
Accessions : protein= NP_001162692; /// NP_572400;, nucleotide= NM_001169221; /// NM_132172;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029955.
BDGP gene expression has embryonic in situ data for CG15478: 4 pix of staining in 1 body parts.
BioGrid reports that CG15478 interacts with CG16896 CG3649 CG2677 .
VDRC has 3 RNAi stocks for FBgn0029955 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 64 of 422.20Up
Head17 31 of 4 3.40Up
Eye5 10 of 4 1.02None
Thoracicoabdominal ganglion18 11 of 4 3.70Up
Salivary gland8 20 of 4 1.65None
Crop1 00 of 4 0.40None
Midgut4 20 of 4 0.90None
Tubule1 00 of 4 0.40Down
Hindgut1 00 of 4 0.40None
Heart2 10 of 4 0.50None
Fat body4 30 of 4 0.82None
Ovary0 00 of 4 0.20Down
Testis1 00 of 4 0.40None
Male accessory glands2 10 of 4 0.50None
Virgin spermatheca4 10 of 4 0.81None
Mated spermatheca1 00 of 4 0.22Down
Adult carcass4 10 of 4 0.90None
Larval CNS174 214 of 435.02Up
Larval Salivary gland3 10 of 4 0.72None
Larval midgut1 00 of 4 0.37None
Larval tubule1 00 of 4 0.30Down
Larval hindgut1 00 of 4 0.26Down
Larval fat body1 00 of 4 0.20Down
Larval trachea0 00 of 4 0.16Down
Larval carcass1 00 of 4 0.25Down
S2 cells (growing)2 10 of 4 0.51None
Whole fly5 10 of 4

Looking for CG15478-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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