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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15479-RA through 18771 annotations produced 1 hits



(CG15479):

Annotation Number : CG15479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032493
Gbrowse : chr2L:13233974-13234595 (-) // 100.0 //
Probeset : 1623474_at
Accessions : protein= NP_609624;, nucleotide= NM_135780;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032493.
BioGrid reports that CG15479 interacts with CG6779 CG30427 CG31324 CG18001 CG4087 CG5271 CG9188 .
VDRC has 3 RNAi stocks for FBgn0032493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 02 of 4 0.50None
Head11 ± 14 of 4 1.30None
Eye8 ± 12 of 4 0.94None
Thoracicoabdominal ganglion8 ± 12 of 4 1.00None
Salivary gland18 ± 12 of 4 2.15Up
Crop16 ± 14 of 4 1.90Up
Midgut7 ± 20 of 4 0.80None
Tubule8 ± 01 of 4 0.90None
Hindgut8 ± 12 of 4 1.00None
Heart2 ± 00 of 4 0.29Down
Fat body8 ± 31 of 4 1.01None
Ovary6 ± 03 of 4 0.80None
Testis6 ± 00 of 4 0.70None
Male accessory glands10 ± 02 of 4 1.20None
Virgin spermatheca8 ± 00 of 4 0.92None
Mated spermatheca8 ± 12 of 4 1.01None
Adult carcass16 ± 22 of 4 1.90None
Larval CNS7 ± 01 of 4 0.81None
Larval Salivary gland9 ± 11 of 4 1.06None
Larval midgut8 ± 20 of 4 1.01None
Larval tubule7 ± 22 of 4 0.80None
Larval hindgut4 ± 10 of 4 0.46Down
Larval fat body15 ± 13 of 4 1.80Up
Larval trachea4 ± 00 of 4 0.54None
Larval carcass5 ± 12 of 4 0.63None
S2 cells (growing)6 ± 02 of 4 0.79None
Whole fly8 ± 12 of 4

Looking for CG15479-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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