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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15485-RA through 18771 annotations produced 1 hits



(CG15485):

Annotation Number : CG15485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032442
Gbrowse : chr2L:12667264-12669169 (-) // 100.0 //
Probeset : 1625690_at
Accessions : protein= NP_609577;, nucleotide= NM_135733;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0032442.
Homophila reports that CG15485 is a close match (8e-27) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
VDRC has 1 RNAi stocks for FBgn0032442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head4 ± 20 of 4 2.00None
Eye2 ± 00 of 4 0.89None
Thoracicoabdominal ganglion2 ± 00 of 4 0.80None
Salivary gland5 ± 20 of 4 2.42None
Crop7 ± 00 of 4 3.10Up
Midgut6 ± 10 of 4 2.80Up
Tubule4 ± 00 of 4 1.80Up
Hindgut5 ± 10 of 4 2.20None
Heart1 ± 00 of 4 0.45None
Fat body6 ± 30 of 4 2.80None
Ovary3 ± 01 of 4 1.40None
Testis5 ± 11 of 4 2.30None
Male accessory glands8 ± 20 of 4 3.60None
Virgin spermatheca1 ± 00 of 4 0.40None
Mated spermatheca2 ± 10 of 4 1.18None
Adult carcass4 ± 10 of 4 1.90None
Larval CNS3 ± 10 of 4 1.40None
Larval Salivary gland8 ± 20 of 4 3.74None
Larval midgut2 ± 00 of 4 1.21None
Larval tubule4 ± 10 of 4 1.90None
Larval hindgut3 ± 10 of 4 1.42None
Larval fat body6 ± 20 of 4 2.80None
Larval trachea3 ± 20 of 4 1.54None
Larval carcass10 ± 04 of 4 4.47Up
S2 cells (growing)5 ± 00 of 4 2.28Up
Whole fly2 ± 00 of 4

Looking for CG15485-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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