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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15505-RA through 18771 annotations produced 1 hits



Odorant-binding protein 99d (Obp99d):

Annotation Number : CG15505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039684
Gbrowse : chr3R:25540260-25540674 (+) // 100.0 //
Probeset : 1623332_at
Accessions : protein= NP_651712;, nucleotide= NM_143455;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded
FlyMine data for FBgn0039684.
VDRC has 3 RNAi stocks for FBgn0039684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30Down
Head30 44 of 4 3.00Up
Eye5 00 of 4 0.57Down
Thoracicoabdominal ganglion3 10 of 4 0.40Down
Salivary gland8 40 of 4 0.89None
Crop3 10 of 4 0.30Down
Midgut5 10 of 4 0.60None
Tubule2 00 of 4 0.30Down
Hindgut3 00 of 4 0.40Down
Heart5 10 of 4 0.56None
Fat body4 30 of 4 0.40Down
Ovary2 00 of 4 0.30Down
Testis2 00 of 4 0.20Down
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca5 11 of 4 0.58Down
Mated spermatheca5 11 of 4 0.58None
Adult carcass101 84 of 410.10Up
Larval CNS6 22 of 4 0.61Down
Larval Salivary gland6 10 of 4 0.64None
Larval midgut7 20 of 4 0.71None
Larval tubule4 10 of 4 0.50Down
Larval hindgut5 00 of 4 0.57Down
Larval fat body5 10 of 4 0.50Down
Larval trachea7 42 of 4 0.72None
Larval carcass2 10 of 4 0.30Down
S2 cells (growing)5 00 of 4 0.56Down
Whole fly10 11 of 4

Looking for CG15505-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime