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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15514-RA through 18771 annotations produced 1 hits



(CG15514):

Annotation Number : CG15514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039712
Gbrowse : chr3R:25685775-25687197 (-) // 100.0 //
Probeset : 1640700_at
Accessions : protein= NP_651739;, nucleotide= NM_143482;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electroni
FlyMine data for FBgn0039712.
BDGP gene expression has embryonic in situ data for CG15514: 4 pix of staining in 1 body parts.
BioGrid reports that CG15514 interacts with CG17855 CG3929 CG4394 CG5050 CG6569 CG8092 .
TRiP has 1 RNAi stocks for FBgn0039712 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 64 of 4 1.40Up
Head114 ± 34 of 4 0.80Down
Eye169 ± 54 of 4 1.21Up
Thoracicoabdominal ganglion154 ± 84 of 4 1.10None
Salivary gland136 ± 74 of 4 0.98None
Crop140 ± 44 of 4 1.00None
Midgut94 ± 64 of 4 0.70Down
Tubule97 ± 44 of 4 0.70Down
Hindgut106 ± 34 of 4 0.80Down
Heart120 ± 74 of 4 0.86None
Fat body108 ± 54 of 4 0.77Down
Ovary263 ± 54 of 4 1.90Up
Testis52 ± 14 of 4 0.40Down
Male accessory glands112 ± 104 of 4 0.80None
Virgin spermatheca116 ± 44 of 4 0.83Down
Mated spermatheca119 ± 44 of 4 0.85Down
Adult carcass98 ± 24 of 4 0.70Down
Larval CNS203 ± 04 of 4 1.45Up
Larval Salivary gland142 ± 44 of 4 1.01None
Larval midgut94 ± 44 of 4 0.67Down
Larval tubule78 ± 24 of 4 0.60Down
Larval hindgut92 ± 14 of 4 0.66Down
Larval fat body97 ± 44 of 4 0.70Down
Larval trachea139 ± 44 of 4 0.99None
Larval carcass105 ± 44 of 4 0.75Down
S2 cells (growing)171 ± 14 of 4 1.23Up
Whole fly140 ± 24 of 4

Looking for CG15514-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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