FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG15523-RA through 18771 annotations produced 1 hits

(CG15523):

Annotation Number : CG15523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039727
Gbrowse : chr3R:25761895-25773852 (+) // 100.0 //
Probeset : 1633846_at
Accessions : protein= NP_651753; /// NP_996310;, nucleotide= NM_143496; /// NM_206587;
FlyMine data for FBgn0039727.
Homophila reports that CG15523 is a close match (4e-11) to human gene CHAC;VPS13A (NP_056001), a gene associated with Choreoacanthocytosis, 200150 (3).
VDRC has 2 RNAi stocks for FBgn0039727 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	40 ± 1	4 of 4	0.60	Down
Head	26 ± 4	4 of 4	0.40	Down
Eye	27 ± 1	4 of 4	0.40	Down
Thoracicoabdominal ganglion	28 ± 2	4 of 4	0.40	Down
Salivary gland	219 ± 6	4 of 4	3.18	Up
Crop	52 ± 4	4 of 4	0.80	None
Midgut	43 ± 2	4 of 4	0.60	Down
Tubule	93 ± 7	4 of 4	1.40	Up
Hindgut	52 ± 2	4 of 4	0.80	Down
Heart	17 ± 1	4 of 4	0.26	Down
Fat body	21 ± 3	4 of 4	0.32	Down
Ovary	69 ± 1	4 of 4	1.00	None
Testis	521 ± 25	4 of 4	7.60	Up
Male accessory glands	327 ± 6	4 of 4	4.80	Up
Virgin spermatheca	48 ± 6	4 of 4	0.71	None
Mated spermatheca	41 ± 3	4 of 4	0.60	Down
Adult carcass	21 ± 2	2 of 4	0.30	Down
Larval CNS	88 ± 2	4 of 4	1.28	Up
Larval Salivary gland	426 ± 30	4 of 4	6.19	Up
Larval midgut	27 ± 3	4 of 4	0.40	Down
Larval tubule	87 ± 3	4 of 4	1.30	Up
Larval hindgut	61 ± 2	4 of 4	0.90	None
Larval fat body	43 ± 13	3 of 4	0.60	None
Larval trachea	65 ± 3	4 of 4	0.96	None
Larval carcass	52 ± 4	4 of 4	0.77	None
S2 cells (growing)	66 ± 4	4 of 4	0.96	None
Whole fly	68 ± 5	4 of 4

Looking for CG15523-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720