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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15529-RA through 18771 annotations produced 1 hits



(CG15529):

Annotation Number : CG15529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039748
Gbrowse : chr3R:25977783-25978993 (+) // 99.59 //
Probeset : 1633245_at
Accessions : protein= NP_651773;, nucleotide= NM_143516;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0039748.
BDGP gene expression has embryonic in situ data for CG15529: 20 pix of staining in 3 body parts.
BioGrid reports that CG15529 interacts with CG17050 CG5327 CG1728 CG2865 CG3081 CG32491 CG3796 CG4755 CG5709 CG7937 CG8291 CG9900 CG9908 CG30052 .
VDRC has 5 RNAi stocks for FBgn0039748 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.30Down
Head42 ± 14 of 4 2.20Up
Eye229 ± 114 of 412.08Up
Thoracicoabdominal ganglion12 ± 12 of 4 0.60Down
Salivary gland90 ± 94 of 4 4.77Up
Crop37 ± 24 of 4 2.00Up
Midgut21 ± 10 of 4 1.10None
Tubule7 ± 10 of 4 0.40Down
Hindgut46 ± 14 of 4 2.40Up
Heart16 ± 14 of 4 0.89None
Fat body3 ± 10 of 4 0.18Down
Ovary12 ± 12 of 4 0.70Down
Testis4 ± 00 of 4 0.20Down
Male accessory glands4 ± 20 of 4 0.20Down
Virgin spermatheca5 ± 10 of 4 0.27Down
Mated spermatheca3 ± 11 of 4 0.17Down
Adult carcass29 ± 14 of 4 1.60Up
Larval CNS3 ± 20 of 4 0.17Down
Larval Salivary gland3 ± 10 of 4 0.19Down
Larval midgut2 ± 10 of 4 0.13Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut9 ± 21 of 4 0.51Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea66 ± 104 of 4 3.49Up
Larval carcass52 ± 44 of 4 2.74Up
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly19 ± 14 of 4

Looking for CG15529-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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