Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15530-RA through 18771 annotations produced 1 hits



(CG15530):

Annotation Number : CG15530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039752
Gbrowse : chr3R:26003598-26005903 (+) // 100.0 //
Probeset : 1639218_s_at
Accessions : protein= NP_651777; /// NP_733354;, nucleotide= NM_143520; /// NM_170475;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039752.
BioGrid reports that CG15530 interacts with CG8766 CG17107 .
VDRC has 2 RNAi stocks for FBgn0039752 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.10Down
Crop5 ± 11 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 10 of 4 0.02Down
Fat body4 ± 30 of 4 0.05Down
Ovary2 ± 00 of 4 0.00Down
Testis1184 ± 354 of 413.70Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca4 ± 20 of 4 0.05Down
Adult carcass8 ± 31 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland996 ± 1224 of 411.50Up
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule3 ± 11 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body83 ± 454 of 4 1.00None
Larval trachea5 ± 61 of 4 0.07Down
Larval carcass2 ± 10 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly86 ± 74 of 4

Looking for CG15530-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime