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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15531-RA through 18771 annotations produced 1 hits


(CG15531):

Annotation Number : CG15531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039755
Gbrowse : chr3R:26020604-26021890 (-) // 100.0 //
Probeset : 1638528_at
Accessions : protein= NP_001097978; /// NP_651780;, nucleotide= NM_001104508; /// NM_143523;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004768 // stearoyl-CoA 9-desaturase activity // inferred from sequence or structural similarity /// 0004768 // stearoy
FlyMine data for FBgn0039755.
BioGrid reports that CG15531 interacts with CG4020 CG9986 .
VDRC has 3 RNAi stocks for FBgn0039755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion20 ± 161 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.01Down
Crop7 ± 20 of 4 0.00Down
Midgut11 ± 50 of 4 0.00Down
Tubule22 ± 111 of 4 0.00Down
Hindgut9 ± 31 of 4 0.00Down
Heart3410 ± 2734 of 4 6.95Up
Fat body3580 ± 2114 of 4 7.30Up
Ovary2 ± 10 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands10 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass2991 ± 434 of 4 6.10Up
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea12 ± 181 of 4 0.03Down
Larval carcass537 ± 404 of 4 1.10None
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly490 ± 184 of 4

Looking for CG15531-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime