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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15537-RA through 18771 annotations produced 1 hits



(CG15537):

Annotation Number : CG15537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039770
Gbrowse : chr3R:26261078-26262236 (-) // 100.0 //
Probeset : 1637593_at
Accessions : protein= NP_001097981;, nucleotide= NM_001104511;
Interpro : 0017047 // adrenocorticotropin-releasing hormone binding // inferred from sequence or structural similarity
FlyMine data for FBgn0039770.
TRiP has 1 RNAi stocks for FBgn0039770 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain289 ± 94 of 454.20Up
Head58 ± 54 of 411.00Up
Eye0 ± 00 of 4 0.18None
Thoracicoabdominal ganglion198 ± 54 of 437.10Up
Salivary gland2 ± 00 of 4 0.37None
Crop1 ± 00 of 4 0.20None
Midgut2 ± 00 of 4 0.50None
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 00 of 4 0.60None
Heart89 ± 154 of 416.74Up
Fat body6 ± 40 of 4 1.25None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.20None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.19None
Mated spermatheca1 ± 00 of 4 0.24None
Adult carcass6 ± 20 of 4 1.10None
Larval CNS49 ± 84 of 4 9.34Up
Larval Salivary gland5 ± 10 of 4 1.01None
Larval midgut1 ± 00 of 4 0.27None
Larval tubule5 ± 20 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.12Down
Larval fat body1 ± 00 of 4 0.20None
Larval trachea4 ± 10 of 4 0.87None
Larval carcass1 ± 00 of 4 0.27None
S2 cells (growing)0 ± 00 of 4 0.17None
Whole fly5 ± 10 of 4

Looking for CG15537-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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