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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15539-RA through 18771 annotations produced 1 hits


March 2006 (FlyBase/BDGP 5.3) (chr3R:26332074-26333560 (+) // 100.0 //):

Annotation Number : CG15539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1628592_at
Accessions : protein= EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 10 of 4 0.30Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.09Down
Crop1 ± 00 of 4 0.10Down
Midgut17 ± 30 of 4 0.60Down
Tubule1 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.10Down
Fat body4 ± 20 of 4 0.14Down
Ovary1 ± 00 of 4 0.10Down
Testis7 ± 01 of 4 0.20Down
Male accessory glands2406 ± 834 of 478.30Up
Virgin spermatheca4 ± 20 of 4 0.15Down
Mated spermatheca6 ± 30 of 4 0.21Down
Adult carcass7 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland57 ± 84 of 4 1.88Up
Larval midgut18 ± 20 of 4 0.60Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body9 ± 40 of 4 0.30Down
Larval trachea4 ± 40 of 4 0.14Down
Larval carcass4 ± 10 of 4 0.15Down
S2 cells (growing)3 ± 10 of 4 0.11Down
Whole fly30 ± 24 of 4

Looking for CG15539-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime