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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1554-RA through 18771 annotations produced 1 hits



chrX:11456805-11464355 (-) // 100.0 // (RNA polymerase II):

Annotation Number : CG1554
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640764_at
Accessions : protein= , nucleotide= NP_511124;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005634 // nucleus // inferred from electronic annotation /// 0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.
BioGrid reports that CG1554 interacts with CG7379 CG3180 CG3180 CG3180 CG3180 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain388 184 of 4 0.70Down
Head339 94 of 4 0.60Down
Eye303 74 of 4 0.52Down
Thoracicoabdominal ganglion376 44 of 4 0.60Down
Salivary gland529 194 of 4 0.90None
Crop507 24 of 4 0.90None
Midgut310 74 of 4 0.50Down
Tubule76 44 of 4 0.10Down
Hindgut329 94 of 4 0.60Down
Heart438 104 of 4 0.75None
Fat body574 484 of 4 0.98None
Ovary1387 214 of 4 2.40Up
Testis97 34 of 4 0.20Down
Male accessory glands681 264 of 4 1.20None
Virgin spermatheca507 244 of 4 0.86None
Mated spermatheca539 374 of 4 0.92None
Adult carcass342 164 of 4 0.60Down
Larval CNS1070 804 of 4 1.82Up
Larval Salivary gland975 374 of 4 1.66Up
Larval midgut461 264 of 4 0.78None
Larval tubule441 54 of 4 0.80None
Larval hindgut563 54 of 4 0.96None
Larval fat body472 274 of 4 0.80None
Larval trachea994 314 of 4 1.69Up
Larval carcass741 284 of 4 1.26Up
S2 cells (growing)780 84 of 4 1.33Up
Whole fly587 504 of 4

Looking for CG1554-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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