Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15544-RA through 18771 annotations produced 1 hits



(CG15544):

Annotation Number : CG15544
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039804
Gbrowse : chr3R:26653571-26667756 (+) // 100.0 //
Probeset : 1641633_at
Accessions : protein= NP_651828;, nucleotide= NM_143571;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039804.
BDGP gene expression has embryonic in situ data for CG15544: 10 pix of staining in 4 body parts.
BioGrid reports that CG15544 interacts with CG1894 .
VDRC has 1 RNAi stocks for FBgn0039804 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 1.70None
Head18 ± 34 of 4 4.60Up
Eye40 ± 34 of 4 9.95Up
Thoracicoabdominal ganglion8 ± 01 of 4 2.00Up
Salivary gland7 ± 20 of 4 1.73None
Crop29 ± 34 of 4 7.30Up
Midgut10 ± 10 of 4 2.60Up
Tubule2 ± 00 of 4 0.60Down
Hindgut3 ± 10 of 4 0.90None
Heart2 ± 10 of 4 0.50None
Fat body6 ± 30 of 4 1.59None
Ovary1 ± 00 of 4 0.30None
Testis2 ± 00 of 4 0.70None
Male accessory glands6 ± 00 of 4 1.60None
Virgin spermatheca3 ± 10 of 4 0.94None
Mated spermatheca1 ± 00 of 4 0.24None
Adult carcass13 ± 40 of 4 3.20None
Larval CNS7 ± 20 of 4 1.77None
Larval Salivary gland5 ± 10 of 4 1.35None
Larval midgut2 ± 00 of 4 0.60None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut7 ± 21 of 4 1.73None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea30 ± 74 of 4 7.44Up
Larval carcass94 ± 144 of 423.09Up
S2 cells (growing)4 ± 10 of 4 1.11None
Whole fly4 ± 10 of 4

Looking for CG15544-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime