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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15550-RA through 18771 annotations produced 1 hits



(CG15550):

Annotation Number : CG15550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039811
Gbrowse : chr3R:26762388-26762820 (-) // 100.0 //
Probeset : 1631753_at
Accessions : protein= NP_651835;, nucleotide= NM_143578;
FlyMine data for FBgn0039811.
VDRC has 2 RNAi stocks for FBgn0039811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 6.30Up
Head18 ± 24 of 414.20Up
Eye1 ± 00 of 4 1.37None
Thoracicoabdominal ganglion2 ± 00 of 4 2.30None
Salivary gland3 ± 00 of 4 2.52None
Crop1 ± 00 of 4 1.30None
Midgut1 ± 00 of 4 1.50None
Tubule3 ± 00 of 4 2.50Up
Hindgut3 ± 10 of 4 2.90None
Heart21 ± 34 of 416.52Up
Fat body4 ± 20 of 4 3.13None
Ovary1 ± 00 of 4 0.80None
Testis2 ± 00 of 4 1.60Up
Male accessory glands2 ± 00 of 4 2.00None
Virgin spermatheca3 ± 10 of 4 2.79None
Mated spermatheca3 ± 10 of 4 2.38None
Adult carcass8 ± 30 of 4 6.90None
Larval CNS1 ± 00 of 4 1.21None
Larval Salivary gland5 ± 20 of 4 4.13None
Larval midgut1 ± 00 of 4 0.96None
Larval tubule11 ± 11 of 4 8.80Up
Larval hindgut3 ± 10 of 4 2.46None
Larval fat body3 ± 00 of 4 3.00Up
Larval trachea7 ± 121 of 4 5.56None
Larval carcass3 ± 00 of 4 2.94None
S2 cells (growing)2 ± 00 of 4 1.73None
Whole fly1 ± 00 of 4

Looking for CG15550-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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