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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15552-RA through 18771 annotations produced 1 hits



Sox100B (Sox100B):

Annotation Number : CG15552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024288
Gbrowse : chr3R:26891078-26909129 (+) // 100.0 //
Probeset : 1623208_at
Accessions : protein= NP_651839;, nucleotide= NM_143582;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0024288.
Homophila reports that CG15552 is a close match (3e-13) to human gene MRGH;SOX3 (NP_005625), a gene associated with Mental retardation, X-linked, with isolated growth hormone deficiency, 300123 (3);Panhypopituitarism, X-linked, 312000 (3).
BioGrid reports that CG15552 interacts with CG32425 .
TRiP has 1 RNAi stocks for FBgn0024288 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024288 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head3 00 of 4 0.30Down
Eye3 10 of 4 0.30Down
Thoracicoabdominal ganglion2 00 of 4 0.20Down
Salivary gland44 43 of 4 4.18Up
Crop2 10 of 4 0.30Down
Midgut75 74 of 4 7.10Up
Tubule8 02 of 4 0.80Down
Hindgut32 24 of 4 3.00Up
Heart3 10 of 4 0.29Down
Fat body7 12 of 4 0.73None
Ovary1 00 of 4 0.10Down
Testis29 24 of 4 2.80Up
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca5 00 of 4 0.48Down
Mated spermatheca2 10 of 4 0.25Down
Adult carcass6 10 of 4 0.70None
Larval CNS2 10 of 4 0.23Down
Larval Salivary gland3 00 of 4 0.28Down
Larval midgut58 44 of 4 5.53Up
Larval tubule2 10 of 4 0.20Down
Larval hindgut45 14 of 4 4.26Up
Larval fat body10 22 of 4 1.00None
Larval trachea3 20 of 4 0.31Down
Larval carcass4 10 of 4 0.45Down
S2 cells (growing)2 00 of 4 0.19Down
Whole fly10 10 of 4

Looking for CG15552-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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