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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15554-RA through 18771 annotations produced 1 hits



(CG15554):

Annotation Number : CG15554
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039820
Gbrowse : chr3R:26951872-26953058 (+) // 100.0 //
Probeset : 1634286_at
Accessions : protein= NP_651844;, nucleotide= NM_143587;
FlyMine data for FBgn0039820.
BDGP gene expression has embryonic in situ data for CG15554: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0039820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.80None
Head13 ± 14 of 4 1.60None
Eye2 ± 10 of 4 0.33Down
Thoracicoabdominal ganglion8 ± 20 of 4 1.00None
Salivary gland9 ± 21 of 4 1.08None
Crop6 ± 00 of 4 0.70None
Midgut4 ± 10 of 4 0.50None
Tubule5 ± 10 of 4 0.70Down
Hindgut5 ± 01 of 4 0.70None
Heart3 ± 10 of 4 0.42Down
Fat body5 ± 30 of 4 0.65None
Ovary2 ± 10 of 4 0.30Down
Testis9 ± 03 of 4 1.10None
Male accessory glands11 ± 30 of 4 1.30None
Virgin spermatheca4 ± 21 of 4 0.50None
Mated spermatheca2 ± 00 of 4 0.29Down
Adult carcass46 ± 34 of 4 5.40Up
Larval CNS2 ± 10 of 4 0.27Down
Larval Salivary gland6 ± 20 of 4 0.81None
Larval midgut3 ± 10 of 4 0.43None
Larval tubule3 ± 00 of 4 0.50Down
Larval hindgut5 ± 00 of 4 0.69None
Larval fat body4 ± 10 of 4 0.60None
Larval trachea8 ± 23 of 4 1.00None
Larval carcass29 ± 54 of 4 3.39Up
S2 cells (growing)5 ± 00 of 4 0.70None
Whole fly8 ± 10 of 4

Looking for CG15554-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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