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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15594-RB through 18771 annotations produced 1 hits


Annotation Number : CG15594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037421
Gbrowse : chr3R:2113588-2115198 (+) // 100.0 //
Probeset : 1624687_a_at
Accessions : protein= NP_649633; /// NP_731062;, nucleotide= NM_141376; /// NM_169132;
FlyMine data for FBgn0037421.
BDGP gene expression has embryonic in situ data for CG15594: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037421 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head2 00 of 4 0.40None
Eye1 00 of 4 0.23None
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland2 00 of 4 0.40None
Crop4 20 of 4 0.80None
Midgut6 10 of 4 1.20None
Tubule3 00 of 4 0.60Down
Hindgut6 30 of 4 1.30None
Heart1 00 of 4 0.36None
Fat body3 20 of 4 0.58None
Ovary3 10 of 4 0.60None
Testis3 10 of 4 0.70None
Male accessory glands5 10 of 4 1.00None
Virgin spermatheca4 20 of 4 0.83None
Mated spermatheca4 20 of 4 0.91None
Adult carcass5 10 of 4 1.00None
Larval CNS2 30 of 4 0.51None
Larval Salivary gland11 40 of 4 2.13None
Larval midgut5 20 of 4 0.96None
Larval tubule7 30 of 4 1.30None
Larval hindgut5 10 of 4 1.01None
Larval fat body6 40 of 4 1.10None
Larval trachea1 00 of 4 0.22None
Larval carcass4 00 of 4 0.79None
S2 cells (growing)9 00 of 4 1.83None
Whole fly5 10 of 4

Looking for CG15594-RB. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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