FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1560-RA through 18771 annotations produced 2 hits

beta-integrin (mys):

Annotation Number : CG1560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004657
Gbrowse : chrX:7955679-7964270 (+) // 100.0 //
Probeset : 1634649_at
Accessions : protein= NP_524793;, nucleotide= NM_080054;
Pathway : cell extension // inferred from genetic interaction /// 0007155 // cell adhesion // inferred from mutant phenotype ///
Interpro : open tracheal system // traceable author statement /// 0007427 // epithelial cell migration
FlyMine data for FBgn0004657.
BDGP gene expression has embryonic in situ data for mys: 19 pix of staining in 11 body parts.
Homophila reports that CG1560 is a close match (7e-12) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG1560 interacts with CG3619 CG10443 CG1765 CG3665 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG8118 CG10491 CG3411 CG3411 CG3411 CG3411 CG18069 CG32555 CG14938 CG6822 CG18076 CG18076 CG7954 CG6831 CG8095 CG10072 .
TRiP has 2 RNAi stocks for FBgn0004657 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	161 ± 16	4 of 4	1.10	None
Head	119 ± 10	4 of 4	0.80	None
Eye	47 ± 3	4 of 4	0.33	Down
Thoracicoabdominal ganglion	99 ± 2	4 of 4	0.70	Down
Salivary gland	49 ± 5	4 of 4	0.35	Down
Crop	334 ± 15	4 of 4	2.30	Up
Midgut	345 ± 27	4 of 4	2.40	Up
Tubule	140 ± 12	4 of 4	1.00	None
Hindgut	263 ± 12	4 of 4	1.80	Up
Heart	88 ± 10	4 of 4	0.62	Down
Fat body	159 ± 18	4 of 4	1.12	None
Ovary	213 ± 13	4 of 4	1.50	Up
Testis	60 ± 7	4 of 4	0.40	Down
Male accessory glands	205 ± 18	4 of 4	1.40	Up
Virgin spermatheca	72 ± 12	4 of 4	0.51	Down
Mated spermatheca	94 ± 7	4 of 4	0.66	Down
Adult carcass	110 ± 9	4 of 4	0.80	Down
Larval CNS	248 ± 25	4 of 4	1.74	Up
Larval Salivary gland	444 ± 84	4 of 4	3.11	Up
Larval midgut	368 ± 11	4 of 4	2.58	Up
Larval tubule	298 ± 19	4 of 4	2.10	Up
Larval hindgut	662 ± 21	4 of 4	4.64	Up
Larval fat body	140 ± 20	4 of 4	1.00	None
Larval trachea	161 ± 5	4 of 4	1.13	None
Larval carcass	588 ± 114	4 of 4	4.12	Up
S2 cells (growing)	1420 ± 110	4 of 4	9.95	Up
Whole fly	142 ± 7	4 of 4

beta-integrin (mys):

Annotation Number : CG1560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004657
Gbrowse : chrX:7955679-7964270 (+) // 100.0 //
Probeset : 1639245_x_at
Accessions : protein= NP_524793;, nucleotide= NM_080054;
Pathway : cell extension // inferred from genetic interaction /// 0007155 // cell adhesion // inferred from mutant phenotype ///
Interpro : open tracheal system // traceable author statement /// 0007427 // epithelial cell migration
FlyMine data for FBgn0004657.
BDGP gene expression has embryonic in situ data for mys: 19 pix of staining in 11 body parts.
Homophila reports that CG1560 is a close match (7e-12) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG1560 interacts with CG3619 CG10443 CG1765 CG3665 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG8118 CG10491 CG3411 CG3411 CG3411 CG3411 CG18069 CG32555 CG14938 CG6822 CG18076 CG18076 CG7954 CG6831 CG8095 CG10072 .
TRiP has 2 RNAi stocks for FBgn0004657 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	236 ± 10	4 of 4	1.00	None
Head	196 ± 13	4 of 4	0.80	None
Eye	112 ± 13	4 of 4	0.46	Down
Thoracicoabdominal ganglion	165 ± 12	4 of 4	0.70	None
Salivary gland	104 ± 6	4 of 4	0.43	Down
Crop	701 ± 38	4 of 4	2.90	Up
Midgut	685 ± 30	4 of 4	2.80	Up
Tubule	234 ± 27	4 of 4	1.00	None
Hindgut	492 ± 8	4 of 4	2.00	Up
Heart	205 ± 22	4 of 4	0.84	None
Fat body	209 ± 22	4 of 4	0.85	None
Ovary	322 ± 16	4 of 4	1.30	None
Testis	102 ± 7	4 of 4	0.40	Down
Male accessory glands	303 ± 14	4 of 4	1.20	None
Virgin spermatheca	113 ± 11	4 of 4	0.46	Down
Mated spermatheca	136 ± 12	4 of 4	0.56	Down
Adult carcass	192 ± 19	4 of 4	0.80	None
Larval CNS	337 ± 14	4 of 4	1.38	None
Larval Salivary gland	800 ± 90	4 of 4	3.27	Up
Larval midgut	472 ± 12	4 of 4	1.93	Up
Larval tubule	562 ± 32	4 of 4	2.30	Up
Larval hindgut	1018 ± 13	4 of 4	4.15	Up
Larval fat body	245 ± 36	4 of 4	1.00	None
Larval trachea	468 ± 129	4 of 4	1.91	Up
Larval carcass	948 ± 120	4 of 4	3.87	Up
S2 cells (growing)	2037 ± 85	4 of 4	8.31	Up
Whole fly	245 ± 30	4 of 4

Looking for CG1560-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720