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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1561-RA through 18771 annotations produced 1 hits



(CG1561):

Annotation Number : CG1561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030317
Gbrowse : chrX:11475984-11478184 (-) // 100.0 //
Probeset : 1624877_at
Accessions : protein= NP_572733; /// NP_996412;, nucleotide= NM_132505; /// NM_206689;
FlyMine data for FBgn0030317.
BDGP gene expression has embryonic in situ data for CG1561: 11 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0030317 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head1802 ± 1434 of 417.60Up
Eye4642 ± 1094 of 445.43Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.08Down
Crop2 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart6 ± 32 of 4 0.06Down
Fat body4 ± 00 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands3 ± 20 of 4 0.00Down
Virgin spermatheca6 ± 20 of 4 0.06Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland7 ± 20 of 4 0.07Down
Larval midgut4 ± 10 of 4 0.05Down
Larval tubule1 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea88 ± 1701 of 4 0.87None
Larval carcass2 ± 10 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly102 ± 84 of 4

Looking for CG1561-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime