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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15624-RA through 18771 annotations produced 1 hits



hoepel2 (hoe2):

Annotation Number : CG15624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031649
Gbrowse : chr2L:4933284-4936341 (-) // 100.0 //
Probeset : 1634295_at
Accessions : protein= NP_001014466; /// NP_608878;, nucleotide= NM_001014466; /// NM_135034;
Pathway : 0016020 // membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic an
Interpro : 0005302 // L-tyrosine transmembrane transporter activity // non-traceable author statement /// 0015137 // citrate transm
FlyMine data for FBgn0031649.
Homophila reports that CG15624 is a close match (3e-81) to human gene BOCA;D15S12;EYCL3;HCL3;OCA2;P;PED;SHEP1 (NP_000266), a gene associated with Albinism, brown oculocutaneous, 203200 (3);Albinism, oculocutaneous, type II, 203200 (3);[Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
TRiP has 1 RNAi stocks for FBgn0031649 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain108 ± 54 of 4 4.80Up
Head166 ± 84 of 4 7.40Up
Eye515 ± 144 of 422.88Up
Thoracicoabdominal ganglion87 ± 34 of 4 3.90Up
Salivary gland6 ± 30 of 4 0.27Down
Crop42 ± 24 of 4 1.90Up
Midgut19 ± 10 of 4 0.90None
Tubule2 ± 00 of 4 0.10Down
Hindgut63 ± 44 of 4 2.80Up
Heart34 ± 24 of 4 1.54Up
Fat body6 ± 30 of 4 0.28Down
Ovary1 ± 00 of 4 0.10Down
Testis115 ± 34 of 4 5.10Up
Male accessory glands25 ± 53 of 4 1.10None
Virgin spermatheca12 ± 20 of 4 0.57Down
Mated spermatheca17 ± 33 of 4 0.78None
Adult carcass9 ± 10 of 4 0.40Down
Larval CNS50 ± 74 of 4 2.22Up
Larval Salivary gland700 ± 1824 of 431.11Up
Larval midgut7 ± 30 of 4 0.33Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut147 ± 154 of 4 6.53Up
Larval fat body8 ± 20 of 4 0.40Down
Larval trachea8 ± 81 of 4 0.37Down
Larval carcass53 ± 64 of 4 2.39Up
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly22 ± 14 of 4

Looking for CG15624-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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