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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15630-RA through 18771 annotations produced 1 hits



(CG15630):

Annotation Number : CG15630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031627
Gbrowse : chr2L:4735546-4794042 (-) // 100.0 //
Probeset : 1635787_at
Accessions : protein= NP_787975;, nucleotide= NM_175961;
FlyMine data for FBgn0031627.
Homophila reports that CG15630 is a close match (8e-11) to human gene KIAA0992;PALLD;PNCA1 (NP_057165), a gene associated with {Pancreatic cancer, susceptibility to, 1}, 606856 (3).
VDRC has 3 RNAi stocks for FBgn0031627 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain251 ± 114 of 421.70Up
Head131 ± 164 of 411.30Up
Eye146 ± 144 of 412.62Up
Thoracicoabdominal ganglion116 ± 64 of 410.00Up
Salivary gland6 ± 40 of 4 0.55None
Crop5 ± 20 of 4 0.50None
Midgut4 ± 10 of 4 0.30Down
Tubule2 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.50Down
Heart2 ± 00 of 4 0.25Down
Fat body1 ± 00 of 4 0.12Down
Ovary2 ± 10 of 4 0.20Down
Testis5 ± 00 of 4 0.50Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.18Down
Mated spermatheca2 ± 00 of 4 0.18Down
Adult carcass9 ± 30 of 4 0.80None
Larval CNS76 ± 194 of 4 6.62Up
Larval Salivary gland1 ± 00 of 4 0.11Down
Larval midgut2 ± 10 of 4 0.20Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.21Down
Larval fat body2 ± 00 of 4 0.20Down
Larval trachea6 ± 21 of 4 0.59Down
Larval carcass4 ± 10 of 4 0.39Down
S2 cells (growing)6 ± 00 of 4 0.60Down
Whole fly11 ± 04 of 4

Looking for CG15630-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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