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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15636-RA through 18771 annotations produced 1 hits



CG15636 (HP6):

Annotation Number : CG15636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031613
Gbrowse : chr2L:4577782-4578103 (-) // 100.0 //
Probeset : 1637972_at
Accessions : protein= NP_608842;, nucleotide= NM_134998;
Pathway : "0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 00
Interpro : telomeric region // inferred from direct assay"
FlyMine data for FBgn0031613.
BioGrid reports that CG15636 interacts with CG18468 CG6219 CG8044 CG1745 CG3680 CG6875 .
VDRC has 2 RNAi stocks for FBgn0031613 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye1 10 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland6 10 of 4 0.20Down
Crop1 00 of 4 0.00Down
Midgut2 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart1 10 of 4 0.06Down
Fat body2 00 of 4 0.06Down
Ovary1 00 of 4 0.00Down
Testis456 74 of 413.50Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 10 of 4 0.05Down
Mated spermatheca2 00 of 4 0.09Down
Adult carcass2 00 of 4 0.10Down
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland2 00 of 4 0.06Down
Larval midgut2 00 of 4 0.08Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.07Down
Larval fat body113 413 of 4 3.40None
Larval trachea1 10 of 4 0.04Down
Larval carcass2 00 of 4 0.08Down
S2 cells (growing)293 84 of 4 8.71Up
Whole fly33 34 of 4

Looking for CG15636-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime