Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15650-RA through 18771 annotations produced 1 hits



(CG15650):

Annotation Number : CG15650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034565
Gbrowse : chr2R:16865232-16865742 (-) // 100.0 //
Probeset : 1641387_at
Accessions : protein= NP_611529;, nucleotide= NM_137685;
FlyMine data for FBgn0034565.
VDRC has 2 RNAi stocks for FBgn0034565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 0.70None
Head8 ± 20 of 4 0.70None
Eye2 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion12 ± 21 of 4 1.00None
Salivary gland23 ± 60 of 4 1.83None
Crop12 ± 00 of 4 1.00None
Midgut22 ± 10 of 4 1.70Up
Tubule13 ± 01 of 4 1.00None
Hindgut12 ± 02 of 4 1.00None
Heart4 ± 20 of 4 0.31Down
Fat body7 ± 50 of 4 0.61None
Ovary9 ± 13 of 4 0.80None
Testis10 ± 01 of 4 0.80None
Male accessory glands12 ± 40 of 4 1.00None
Virgin spermatheca10 ± 10 of 4 0.84None
Mated spermatheca5 ± 10 of 4 0.46Down
Adult carcass13 ± 00 of 4 1.10None
Larval CNS9 ± 24 of 4 0.74None
Larval Salivary gland24 ± 30 of 4 1.89Up
Larval midgut26 ± 30 of 4 2.11Up
Larval tubule13 ± 21 of 4 1.00None
Larval hindgut13 ± 23 of 4 1.05None
Larval fat body25 ± 33 of 4 2.00Up
Larval trachea12 ± 42 of 4 1.00None
Larval carcass20 ± 20 of 4 1.61None
S2 cells (growing)20 ± 04 of 4 1.61Up
Whole fly12 ± 11 of 4

Looking for CG15650-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime