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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15651-RA through 18771 annotations produced 1 hits



(CG15651):

Annotation Number : CG15651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034567
Gbrowse : chr2R:16871342-16874000 (-) // 99.84 //
Probeset : 1637666_at
Accessions : protein= NP_611531;, nucleotide= NM_137687;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034567.
BDGP gene expression has embryonic in situ data for CG15651: 12 pix of staining in 3 body parts.
Homophila reports that CG15651 is a close match (3e-33) to human gene FKRP;LGMD2I;MDC1C (NP_077277), a gene associated with Muscle-eye-brain disease, 253280 (3);Muscular dystrophy, congenital, 1C, 606612 (3);Muscular dystrophy, limb-girdle, type 2I, 607155 (3);Walker-Warburg syndrome, 236670 (3).
BioGrid reports that CG15651 interacts with CG18766 .
TRiP has 1 RNAi stocks for FBgn0034567 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain534 294 of 423.50Up
Head129 114 of 4 5.70Up
Eye19 34 of 4 0.84None
Thoracicoabdominal ganglion506 214 of 422.20Up
Salivary gland3 20 of 4 0.15Down
Crop4 10 of 4 0.20Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart4 00 of 4 0.19Down
Fat body10 51 of 4 0.48None
Ovary1 00 of 4 0.00Down
Testis9 13 of 4 0.40Down
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.14Down
Mated spermatheca2 10 of 4 0.12Down
Adult carcass11 20 of 4 0.50None
Larval CNS272 464 of 411.97Up
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut0 00 of 4 0.04Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.13Down
Larval fat body6 21 of 4 0.30Down
Larval trachea2 10 of 4 0.10Down
Larval carcass4 10 of 4 0.22Down
S2 cells (growing)2 00 of 4 0.11Down
Whole fly22 44 of 4

Looking for CG15651-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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