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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15658-RA through 18771 annotations produced 1 hits



/// (CG15658 /// DmirCG15658):

Annotation Number : CG15658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034602
Gbrowse : chr2R:17081077-17086941 (+) // 100.0 //
Probeset : 1624410_at
Accessions : protein= NP_611561;, nucleotide= NM_137717;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0034602.
BDGP gene expression has embryonic in situ data for CG15658: 12 pix of staining in 5 body parts.
BioGrid reports that CG15658 interacts with CG9293 CG17050 CG7583 .
TRiP has 1 RNAi stocks for FBgn0034602 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034602 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 14 of 4 1.70Up
Head90 ± 54 of 4 1.50Up
Eye82 ± 84 of 4 1.36None
Thoracicoabdominal ganglion179 ± 34 of 4 3.00Up
Salivary gland37 ± 40 of 4 0.61Down
Crop21 ± 22 of 4 0.30Down
Midgut409 ± 184 of 4 6.80Up
Tubule388 ± 354 of 4 6.40Up
Hindgut118 ± 44 of 4 1.90Up
Heart175 ± 114 of 4 2.89Up
Fat body141 ± 164 of 4 2.32Up
Ovary34 ± 24 of 4 0.60Down
Testis18 ± 14 of 4 0.30Down
Male accessory glands16 ± 20 of 4 0.30Down
Virgin spermatheca199 ± 94 of 4 3.29Up
Mated spermatheca129 ± 134 of 4 2.13Up
Adult carcass75 ± 94 of 4 1.20None
Larval CNS100 ± 94 of 4 1.66Up
Larval Salivary gland7 ± 20 of 4 0.12Down
Larval midgut325 ± 234 of 4 5.36Up
Larval tubule727 ± 104 of 412.00Up
Larval hindgut224 ± 144 of 4 3.70Up
Larval fat body226 ± 194 of 4 3.70Up
Larval trachea5 ± 41 of 4 0.10Down
Larval carcass25 ± 24 of 4 0.41Down
S2 cells (growing)6 ± 10 of 4 0.10Down
Whole fly60 ± 64 of 4

Looking for CG15658-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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