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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15661-RA through 18771 annotations produced 1 hits



(CG15661):

Annotation Number : CG15661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034605
Gbrowse : chr2R:17103023-17104665 (-) // 100.0 //
Probeset : 1625873_at
Accessions : protein= NP_001036565; /// NP_611564;, nucleotide= NM_001043100; /// NM_137720;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0034605.
Homophila reports that CG15661 is a close match (6e-54) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 1 RNAi stocks for FBgn0034605 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 14 of 4 2.20Up
Head237 ± 174 of 4 5.90Up
Eye110 ± 144 of 4 2.78Up
Thoracicoabdominal ganglion135 ± 24 of 4 3.40Up
Salivary gland4 ± 10 of 4 0.12Down
Crop999 ± 474 of 425.00Up
Midgut14 ± 04 of 4 0.40Down
Tubule12 ± 12 of 4 0.30Down
Hindgut317 ± 214 of 4 7.90Up
Heart92 ± 34 of 4 2.32Up
Fat body386 ± 484 of 4 9.68Up
Ovary2 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands7 ± 22 of 4 0.20Down
Virgin spermatheca367 ± 284 of 4 9.21Up
Mated spermatheca351 ± 124 of 4 8.81Up
Adult carcass209 ± 184 of 4 5.30Up
Larval CNS26 ± 134 of 4 0.66None
Larval Salivary gland1 ± 10 of 4 0.05Down
Larval midgut14 ± 14 of 4 0.36Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.07Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass5 ± 11 of 4 0.14Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly39 ± 24 of 4

Looking for CG15661-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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