FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG15669-RD through 18771 annotations produced 3 hits

Misexpression suppressor of KSR 2 (MESK2):

Annotation Number : CG15669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043070
Gbrowse : chr2R:17389590-17404747 (+) // 100.0 //
Probeset : 1634325_a_at
Accessions : protein= NP_523804; /// NP_726076; /// NP_726077; /// NP_726078; /// NP_995912; /// NP_995913; /// NP_995914; /// NP_995915; /// NP_995916;, nucleotide= NM_079080; /// NM_166454; /// NM_166455; /// NM_166456; /// NM_206190; /// NM_206191; /// NM_206192; /// NM_206193; /// NM_206194;
FlyMine data for FBgn0043070.
BDGP gene expression has embryonic in situ data for MESK2: 4 pix of staining in 1 body parts.
Homophila reports that CG15669 is a close match (1e-60) to human gene CMT4D;HMSNL;NDRG1 (NP_006087), a gene associated with Charcot-Marie-Tooth disease, type 4D, 601455 (3).
BioGrid reports that CG15669 interacts with CG18497 CG2910 CG30026 CG30159 CG30497 CG5134 CG5272 CG7535 CG9916 CG9375 CG9375 .
TRiP has 1 RNAi stocks for FBgn0043070 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043070 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1061 ± 31	4 of 4	16.50	Up
Head	396 ± 32	4 of 4	6.20	Up
Eye	171 ± 13	4 of 4	2.68	Up
Thoracicoabdominal ganglion	1218 ± 22	4 of 4	19.00	Up
Salivary gland	84 ± 7	4 of 4	1.31	None
Crop	45 ± 4	4 of 4	0.70	Down
Midgut	23 ± 1	4 of 4	0.40	Down
Tubule	29 ± 4	4 of 4	0.50	Down
Hindgut	65 ± 0	4 of 4	1.00	None
Heart	21 ± 1	4 of 4	0.34	Down
Fat body	35 ± 5	4 of 4	0.55	Down
Ovary	23 ± 0	4 of 4	0.40	Down
Testis	9 ± 1	4 of 4	0.10	Down
Male accessory glands	114 ± 7	4 of 4	1.80	Up
Virgin spermatheca	28 ± 2	4 of 4	0.45	Down
Mated spermatheca	21 ± 0	4 of 4	0.33	Down
Adult carcass	115 ± 12	4 of 4	1.80	Up
Larval CNS	138 ± 12	4 of 4	2.16	Up
Larval Salivary gland	13 ± 1	4 of 4	0.21	Down
Larval midgut	14 ± 1	4 of 4	0.23	Down
Larval tubule	26 ± 1	4 of 4	0.40	Down
Larval hindgut	17 ± 0	4 of 4	0.27	Down
Larval fat body	21 ± 2	4 of 4	0.30	Down
Larval trachea	10 ± 5	4 of 4	0.16	Down
Larval carcass	20 ± 0	4 of 4	0.33	Down
S2 cells (growing)	12 ± 0	4 of 4	0.20	Down
Whole fly	64 ± 1	4 of 4

Misexpression suppressor of KSR 2 (MESK2):

Annotation Number : CT35853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043070
Gbrowse : chr2R:17403384-17403838 (+) // 100.0 //
Probeset : 1635541_s_at
Accessions : protein= NP_523804; /// NP_726076; /// NP_726077; /// NP_726078; /// NP_995912; /// NP_995913; /// NP_995914; /// NP_995915; /// NP_995916;, nucleotide= NM_079080; /// NM_166454; /// NM_166455; /// NM_166456; /// NM_206190; /// NM_206191; /// NM_206192; /// NM_206193; /// NM_206194;
FlyMine data for FBgn0043070.
BDGP gene expression has embryonic in situ data for MESK2: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0043070 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043070 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	226 ± 6	4 of 4	11.00	Up
Head	72 ± 12	4 of 4	3.50	Up
Eye	38 ± 3	4 of 4	1.87	Up
Thoracicoabdominal ganglion	163 ± 17	4 of 4	8.00	Up
Salivary gland	27 ± 4	2 of 4	1.33	None
Crop	11 ± 2	1 of 4	0.60	Down
Midgut	11 ± 3	0 of 4	0.60	None
Tubule	16 ± 1	3 of 4	0.80	Down
Hindgut	16 ± 1	4 of 4	0.80	None
Heart	7 ± 0	3 of 4	0.38	Down
Fat body	13 ± 2	3 of 4	0.64	Down
Ovary	9 ± 0	3 of 4	0.40	Down
Testis	10 ± 0	3 of 4	0.50	Down
Male accessory glands	46 ± 4	4 of 4	2.30	Up
Virgin spermatheca	9 ± 1	1 of 4	0.44	Down
Mated spermatheca	9 ± 1	0 of 4	0.45	Down
Adult carcass	35 ± 4	3 of 4	1.70	Up
Larval CNS	16 ± 3	4 of 4	0.81	None
Larval Salivary gland	9 ± 3	2 of 4	0.46	Down
Larval midgut	9 ± 1	0 of 4	0.46	Down
Larval tubule	15 ± 0	2 of 4	0.70	Down
Larval hindgut	5 ± 2	1 of 4	0.27	Down
Larval fat body	11 ± 2	0 of 4	0.50	Down
Larval trachea	5 ± 0	0 of 4	0.26	Down
Larval carcass	12 ± 1	3 of 4	0.62	Down
S2 cells (growing)	12 ± 0	4 of 4	0.59	Down
Whole fly	20 ± 1	3 of 4

Misexpression suppressor of KSR 2 (MESK2):

Annotation Number : CG15669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043070
Gbrowse : chr2R:17389590-17401091 (+) // 99.39 //
Probeset : 1636999_a_at
Accessions : protein= NP_523804; /// NP_726076; /// NP_726077; /// NP_726078; /// NP_995912; /// NP_995913; /// NP_995914; /// NP_995915; /// NP_995916;, nucleotide= NM_079080; /// NM_166454; /// NM_166455; /// NM_166456; /// NM_206190; /// NM_206191; /// NM_206192; /// NM_206193; /// NM_206194;
FlyMine data for FBgn0043070.
BDGP gene expression has embryonic in situ data for MESK2: 4 pix of staining in 1 body parts.
Homophila reports that CG15669 is a close match (1e-60) to human gene CMT4D;HMSNL;NDRG1 (NP_006087), a gene associated with Charcot-Marie-Tooth disease, type 4D, 601455 (3).
BioGrid reports that CG15669 interacts with CG18497 CG2910 CG30026 CG30159 CG30497 CG5134 CG5272 CG7535 CG9916 CG9375 CG9375 .
TRiP has 1 RNAi stocks for FBgn0043070 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043070 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	610 ± 12	4 of 4	3.40	Up
Head	315 ± 35	4 of 4	1.70	Up
Eye	397 ± 17	4 of 4	2.19	Up
Thoracicoabdominal ganglion	656 ± 56	4 of 4	3.60	Up
Salivary gland	485 ± 10	4 of 4	2.67	Up
Crop	374 ± 34	4 of 4	2.10	Up
Midgut	202 ± 12	4 of 4	1.10	None
Tubule	285 ± 29	4 of 4	1.60	Up
Hindgut	487 ± 23	4 of 4	2.70	Up
Heart	159 ± 4	4 of 4	0.88	None
Fat body	71 ± 15	4 of 4	0.39	Down
Ovary	173 ± 8	4 of 4	1.00	None
Testis	573 ± 16	4 of 4	3.20	Up
Male accessory glands	81 ± 8	4 of 4	0.40	Down
Virgin spermatheca	77 ± 5	4 of 4	0.42	Down
Mated spermatheca	57 ± 3	4 of 4	0.32	Down
Adult carcass	162 ± 5	4 of 4	0.90	None
Larval CNS	324 ± 29	4 of 4	1.78	Up
Larval Salivary gland	83 ± 5	4 of 4	0.46	Down
Larval midgut	126 ± 8	4 of 4	0.69	Down
Larval tubule	286 ± 14	4 of 4	1.60	Up
Larval hindgut	298 ± 9	4 of 4	1.64	Up
Larval fat body	119 ± 32	4 of 4	0.70	None
Larval trachea	77 ± 10	4 of 4	0.42	Down
Larval carcass	119 ± 18	4 of 4	0.66	Down
S2 cells (growing)	279 ± 3	4 of 4	1.54	Up
Whole fly	181 ± 7	4 of 4

Looking for CG15669-RD. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720