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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1567-RA through 18771 annotations produced 1 hits



C901 (C901):

Annotation Number : CG1567
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021742
Gbrowse : chrX:10858239-10861165 (-) // 100.0 //
Probeset : 1633065_at
Accessions : protein= NP_572673;, nucleotide= NM_132445;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0021742.
Homophila reports that CG1567 is a close match (6e-11) to human gene HHIP;HIP;STQTL12 (NP_071920), a gene associated with {Stature QTL 12}, 612224 (2).
BioGrid reports that CG1567 interacts with CG15781 CG1665 CG17377 CG3647 CG3815 CG4087 CG4863 CG5002 CG5105 CG5119 CG5803 CG7892 CG8036 CG9091 CG9653 Dmel CG33715 .
VDRC has 2 RNAi stocks for FBgn0021742 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 02 of 4 4.30Up
Head2 ± 10 of 4 1.00None
Eye4 ± 00 of 4 2.22None
Thoracicoabdominal ganglion6 ± 10 of 4 2.90None
Salivary gland1 ± 00 of 4 0.80None
Crop0 ± 00 of 4 0.30None
Midgut4 ± 10 of 4 2.00None
Tubule1 ± 00 of 4 0.60Down
Hindgut3 ± 10 of 4 1.50None
Heart4 ± 11 of 4 2.00None
Fat body2 ± 20 of 4 1.30None
Ovary1 ± 00 of 4 0.60None
Testis1 ± 00 of 4 0.70None
Male accessory glands5 ± 20 of 4 2.60None
Virgin spermatheca2 ± 00 of 4 1.33None
Mated spermatheca3 ± 10 of 4 1.60None
Adult carcass3 ± 10 of 4 1.40None
Larval CNS1 ± 10 of 4 0.88None
Larval Salivary gland3 ± 20 of 4 1.84None
Larval midgut2 ± 00 of 4 1.10None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut4 ± 00 of 4 2.29None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea6 ± 30 of 4 3.20None
Larval carcass4 ± 20 of 4 2.24None
S2 cells (growing)2 ± 00 of 4 1.00None
Whole fly2 ± 10 of 4

Looking for CG1567-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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