FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1571-RA through 18771 annotations produced 1 hits

(CG1571):

Annotation Number : CG1571
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029993
Gbrowse : chrX:7970186-7972240 (+) // 100.0 //
Probeset : 1641335_at
Accessions : protein= NP_572435;, nucleotide= NM_132207;
Pathway : 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule asso
Interpro : "0003774 // motor activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // infer
FlyMine data for FBgn0029993.
BDGP gene expression has embryonic in situ data for CG1571: 4 pix of staining in 1 body parts.
Homophila reports that CG1571 is a close match (1e-81) to human gene (NP_075462), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0029993 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.20	Down
Head	4 ± 0	0 of 4	0.30	Down
Eye	1 ± 1	0 of 4	0.14	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.10	Down
Salivary gland	3 ± 0	0 of 4	0.23	Down
Crop	6 ± 1	0 of 4	0.40	Down
Midgut	2 ± 1	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 0	0 of 4	0.20	Down
Heart	2 ± 1	0 of 4	0.15	Down
Fat body	3 ± 4	0 of 4	0.27	Down
Ovary	2 ± 0	1 of 4	0.20	Down
Testis	264 ± 14	4 of 4	18.30	Up
Male accessory glands	4 ± 1	0 of 4	0.30	Down
Virgin spermatheca	7 ± 1	2 of 4	0.54	Down
Mated spermatheca	7 ± 2	1 of 4	0.49	None
Adult carcass	1 ± 0	0 of 4	0.10	Down
Larval CNS	3 ± 1	0 of 4	0.26	Down
Larval Salivary gland	1 ± 0	0 of 4	0.10	Down
Larval midgut	2 ± 0	0 of 4	0.19	Down
Larval tubule	2 ± 0	0 of 4	0.20	Down
Larval hindgut	3 ± 1	1 of 4	0.22	Down
Larval fat body	21 ± 10	2 of 4	1.50	None
Larval trachea	2 ± 1	0 of 4	0.20	Down
Larval carcass	2 ± 0	0 of 4	0.14	Down
S2 cells (growing)	3 ± 0	0 of 4	0.22	Down
Whole fly	14 ± 2	4 of 4

Looking for CG1571-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720