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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15719-RA through 18771 annotations produced 1 hits



(CG15719):

Annotation Number : CG15719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030440
Gbrowse : chrX:12898182-12898777 (-) // 100.0 //
Probeset : 1631829_at
Accessions : protein= NP_572846;, nucleotide= NM_132618;
Pathway : "0033178 // proton-transporting two-sector ATPase complex
Interpro : catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase
FlyMine data for FBgn0030440.
VDRC has 1 RNAi stocks for FBgn0030440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion8 ± 10 of 4 0.30Down
Salivary gland12 ± 10 of 4 0.46Down
Crop2 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart3 ± 00 of 4 0.12Down
Fat body5 ± 40 of 4 0.21Down
Ovary2 ± 00 of 4 0.10Down
Testis345 ± 164 of 412.90Up
Male accessory glands9 ± 21 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.08Down
Mated spermatheca4 ± 10 of 4 0.18Down
Adult carcass6 ± 20 of 4 0.30Down
Larval CNS6 ± 10 of 4 0.25Down
Larval Salivary gland3 ± 10 of 4 0.12Down
Larval midgut4 ± 20 of 4 0.17Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.09Down
Larval fat body24 ± 102 of 4 0.90None
Larval trachea2 ± 20 of 4 0.10Down
Larval carcass3 ± 10 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly26 ± 14 of 4

Looking for CG15719-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime