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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15727-RA through 18771 annotations produced 1 hits



(CG15727):

Annotation Number : CG15727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030410
Gbrowse : chrX:12522402-12523631 (-) // 100.0 //
Probeset : 1627409_at
Accessions : protein= NP_572817;, nucleotide= NM_132589;
FlyMine data for FBgn0030410.
BDGP gene expression has embryonic in situ data for CG15727: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 24 of 4 1.00None
Head63 74 of 4 0.90None
Eye116 64 of 4 1.64Up
Thoracicoabdominal ganglion126 74 of 4 1.80Up
Salivary gland31 64 of 4 0.44Down
Crop54 44 of 4 0.80None
Midgut44 34 of 4 0.60Down
Tubule40 24 of 4 0.60Down
Hindgut37 14 of 4 0.50Down
Heart29 04 of 4 0.42Down
Fat body37 44 of 4 0.52Down
Ovary159 44 of 4 2.20Up
Testis60 24 of 4 0.80None
Male accessory glands44 34 of 4 0.60Down
Virgin spermatheca40 24 of 4 0.56Down
Mated spermatheca45 14 of 4 0.64Down
Adult carcass38 14 of 4 0.50Down
Larval CNS52 44 of 4 0.74None
Larval Salivary gland74 34 of 4 1.05None
Larval midgut49 34 of 4 0.70Down
Larval tubule76 24 of 4 1.10None
Larval hindgut48 34 of 4 0.69Down
Larval fat body50 14 of 4 0.70Down
Larval trachea57 64 of 4 0.81None
Larval carcass44 34 of 4 0.62Down
S2 cells (growing)47 24 of 4 0.66Down
Whole fly71 64 of 4

Looking for CG15727-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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