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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15728-RA through 18771 annotations produced 1 hits


Annotation Number : CG15728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030409
Gbrowse : chrX:12521265-12522282 (+) // 100.0 //
Probeset : 1623204_at
Accessions : protein= NP_572816;, nucleotide= NM_132588;
FlyMine data for FBgn0030409.
BDGP gene expression has embryonic in situ data for CG15728: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030409 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head1 00 of 4 0.10Down
Eye0 00 of 4 0.05Down
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland1 00 of 4 0.09Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart1 10 of 4 0.12Down
Fat body2 20 of 4 0.16Down
Ovary2 10 of 4 0.10Down
Testis213 94 of 413.60Up
Male accessory glands5 20 of 4 0.30Down
Virgin spermatheca6 10 of 4 0.42Down
Mated spermatheca3 10 of 4 0.23Down
Adult carcass5 20 of 4 0.30Down
Larval CNS1 10 of 4 0.12Down
Larval Salivary gland5 10 of 4 0.37Down
Larval midgut3 10 of 4 0.24Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.23Down
Larval fat body24 72 of 4 1.50None
Larval trachea2 20 of 4 0.16Down
Larval carcass1 00 of 4 0.10Down
S2 cells (growing)1 00 of 4 0.12Down
Whole fly15 14 of 4

Looking for CG15728-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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