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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15756-RA through 18771 annotations produced 1 hits



(CG15756):

Annotation Number : CG15756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030493
Gbrowse : chrX:13428505-13429836 (+) // 100.0 //
Probeset : 1628085_at
Accessions : protein= NP_572895;, nucleotide= NM_132667;
Interpro : 0042302 // structural constituent of cuticle // inferred from electronic annotation
FlyMine data for FBgn0030493.
VDRC has 3 RNAi stocks for FBgn0030493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head2 10 of 4 1.20None
Eye2 10 of 4 0.96None
Thoracicoabdominal ganglion3 10 of 4 1.80None
Salivary gland6 20 of 4 2.89None
Crop3 00 of 4 1.70None
Midgut4 10 of 4 2.10None
Tubule2 00 of 4 1.20None
Hindgut3 10 of 4 1.60None
Heart0 00 of 4 0.31None
Fat body2 10 of 4 1.22None
Ovary3 10 of 4 1.50None
Testis1 00 of 4 0.80None
Male accessory glands2 10 of 4 1.20None
Virgin spermatheca1 00 of 4 0.93None
Mated spermatheca3 10 of 4 1.83None
Adult carcass6 10 of 4 3.00None
Larval CNS3 10 of 4 1.45None
Larval Salivary gland3 10 of 4 1.51None
Larval midgut3 10 of 4 1.72None
Larval tubule5 20 of 4 2.70None
Larval hindgut0 00 of 4 0.45None
Larval fat body4 10 of 4 2.00None
Larval trachea9 30 of 4 4.64Up
Larval carcass6 21 of 4 3.33None
S2 cells (growing)3 10 of 4 1.80None
Whole fly2 00 of 4

Looking for CG15756-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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