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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15757-RA through 18771 annotations produced 1 hits



CG15757 (Cpr12A):

Annotation Number : CG15757
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030494
Gbrowse : chrX:13437675-13438952 (+) // 100.0 //
Probeset : 1623060_at
Accessions : protein= NP_572896;, nucleotide= NM_132668;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0030494.
BDGP gene expression has embryonic in situ data for CG15757: 11 pix of staining in 1 body parts.
BioGrid reports that CG15757 interacts with CG3298 CG6457 CG9924 CG32581 CG8974 .
VDRC has 3 RNAi stocks for FBgn0030494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head2 ± 10 of 4 0.40None
Eye8 ± 31 of 4 1.25None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40None
Salivary gland6 ± 20 of 4 0.98None
Crop5 ± 10 of 4 0.80None
Midgut5 ± 10 of 4 0.80None
Tubule5 ± 10 of 4 0.80None
Hindgut4 ± 10 of 4 0.70None
Heart5 ± 00 of 4 0.88None
Fat body9 ± 40 of 4 1.46None
Ovary3 ± 10 of 4 0.50None
Testis3 ± 10 of 4 0.60None
Male accessory glands7 ± 30 of 4 1.10None
Virgin spermatheca5 ± 10 of 4 0.81None
Mated spermatheca6 ± 10 of 4 1.03None
Adult carcass13 ± 40 of 4 2.10None
Larval CNS5 ± 11 of 4 0.77None
Larval Salivary gland7 ± 00 of 4 1.12None
Larval midgut4 ± 10 of 4 0.61None
Larval tubule5 ± 10 of 4 0.80None
Larval hindgut47 ± 24 of 4 7.17Up
Larval fat body9 ± 20 of 4 1.50None
Larval trachea1424 ± 1884 of 4216.58Up
Larval carcass463 ± 1064 of 470.55Up
S2 cells (growing)5 ± 00 of 4 0.89None
Whole fly6 ± 10 of 4

Looking for CG15757-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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