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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15766-RA through 18771 annotations produced 1 hits



(CG15766):

Annotation Number : CG15766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029813
Gbrowse : chrX:5709148-5709799 (-) // 100.0 //
Probeset : 1636553_at
Accessions : protein= NP_572268;, nucleotide= NM_132040;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0029813.
VDRC has 1 RNAi stocks for FBgn0029813 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20Down
Head2 ± 00 of 4 0.20Down
Eye9 ± 20 of 4 0.81None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland25 ± 30 of 4 2.28Up
Crop5 ± 30 of 4 0.50None
Midgut17 ± 20 of 4 1.50None
Tubule6 ± 10 of 4 0.50Down
Hindgut4 ± 10 of 4 0.40Down
Heart62 ± 54 of 4 5.49Up
Fat body13 ± 70 of 4 1.21None
Ovary17 ± 10 of 4 1.60Up
Testis0 ± 00 of 4 0.00Down
Male accessory glands4 ± 30 of 4 0.40None
Virgin spermatheca5 ± 10 of 4 0.52None
Mated spermatheca8 ± 20 of 4 0.78None
Adult carcass8 ± 30 of 4 0.70None
Larval CNS3 ± 20 of 4 0.27Down
Larval Salivary gland2 ± 00 of 4 0.26Down
Larval midgut7 ± 30 of 4 0.65None
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut3 ± 10 of 4 0.26Down
Larval fat body2 ± 00 of 4 0.20Down
Larval trachea21 ± 30 of 4 1.88Up
Larval carcass7 ± 20 of 4 0.67None
S2 cells (growing)26 ± 20 of 4 2.38Up
Whole fly11 ± 20 of 4

Looking for CG15766-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime