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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15793-RA through 18771 annotations produced 1 hits

Downstream of raf1 (Dsor1):

Annotation Number : CG15793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010269
Gbrowse : chrX:9141827-9144068 (+) // 100.0 //
Probeset : 1626006_at
Accessions : protein= NP_511098;, nucleotide= NM_078543;
Pathway : embryo // traceable author statement /// 0042386 // hemocyte differentiation // inferred from genetic interaction /// 0
FlyMine data for FBgn0010269.
BDGP gene expression has embryonic in situ data for Dsor1: 4 pix of staining in 1 body parts.
Homophila reports that CG15793 is a close match (8e-11) to human gene ABL1 (NP_009297), a gene associated with Leukemia, Philadelphia chromosome-positive, resistant to imatinib (3).
BioGrid reports that CG15793 interacts with CG3166 CG6875 CG3954 CG9623 CG8118 CG2845 CG2845 CG2845 CG2845 CG2845 CG17077 CG9375 CG9375 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG18085 CG11502 CG10079 CG10079 CG1389 CG1389 CG1389 CG5123 CG5123 CG5123 CG5123 CG7109 CG4531 CG7873 CG7873 CG7873 CG7873 CG4637 CG3936 CG4790 CG9856 CG9856 CG9375 CG9375 CG32211 CG3166 CG2899 CG2845 CG4319 .
TRiP has 7 RNAi stocks for FBgn0010269 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010269 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 164 of 4 1.90Up
Head83 74 of 4 0.70Down
Eye77 54 of 4 0.67Down
Thoracicoabdominal ganglion179 34 of 4 1.60Up
Salivary gland130 64 of 4 1.13None
Crop73 64 of 4 0.60Down
Midgut66 84 of 4 0.60Down
Tubule118 34 of 4 1.00None
Hindgut104 34 of 4 0.90None
Heart80 34 of 4 0.70Down
Fat body56 64 of 4 0.49Down
Ovary213 84 of 4 1.90Up
Testis17 10 of 4 0.10Down
Male accessory glands104 74 of 4 0.90None
Virgin spermatheca75 54 of 4 0.66Down
Mated spermatheca73 34 of 4 0.63Down
Adult carcass77 74 of 4 0.70Down
Larval CNS189 64 of 4 1.64Up
Larval Salivary gland116 74 of 4 1.01None
Larval midgut94 34 of 4 0.82None
Larval tubule136 94 of 4 1.20None
Larval hindgut125 64 of 4 1.08None
Larval fat body61 44 of 4 0.50Down
Larval trachea90 44 of 4 0.79None
Larval carcass96 74 of 4 0.84None
S2 cells (growing)102 34 of 4 0.89None
Whole fly115 84 of 4

Looking for CG15793-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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