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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15803-RA through 18771 annotations produced 1 hits



(CG15803):

Annotation Number : CG15803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038606
Gbrowse : chr3R:14178555-14181249 (-) // 100.0 //
Probeset : 1634910_at
Accessions : protein= NP_650713;, nucleotide= NM_142456;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0038606.
BioGrid reports that CG15803 interacts with CG5053 CG17420 CG4896 .
VDRC has 2 RNAi stocks for FBgn0038606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 4.60Up
Head2 00 of 4 1.10None
Eye1 00 of 4 0.70None
Thoracicoabdominal ganglion8 20 of 4 4.30Up
Salivary gland8 30 of 4 4.00None
Crop19 10 of 4 9.60Up
Midgut1 00 of 4 0.80None
Tubule2 00 of 4 1.40None
Hindgut3 00 of 4 1.60None
Heart1 00 of 4 0.55None
Fat body2 10 of 4 1.11None
Ovary0 00 of 4 0.40None
Testis1 00 of 4 0.50None
Male accessory glands5 10 of 4 2.70None
Virgin spermatheca6 20 of 4 3.25None
Mated spermatheca8 10 of 4 4.06Up
Adult carcass6 40 of 4 3.30None
Larval CNS2 10 of 4 1.19None
Larval Salivary gland3 10 of 4 1.73None
Larval midgut1 00 of 4 0.76None
Larval tubule2 00 of 4 1.40None
Larval hindgut1 00 of 4 0.72None
Larval fat body1 00 of 4 0.90None
Larval trachea2 30 of 4 1.14None
Larval carcass3 10 of 4 1.51None
S2 cells (growing)3 10 of 4 1.58None
Whole fly2 00 of 4

Looking for CG15803-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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