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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15807-RA through 18771 annotations produced 1 hits



Cyp313a5 (Cyp313a5):

Annotation Number : CG15807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038005
Gbrowse : chr3R:8058574-8060406 (-) // 100.0 //
Probeset : 1623795_at
Accessions : protein= NP_650168;, nucleotide= NM_141911;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0038005.
BDGP gene expression has embryonic in situ data for Cyp313a5: 4 pix of staining in 1 body parts.
Homophila reports that CG15807 is a close match (2e-11) to human gene CYP2C9 (NP_000762), a gene associated with Tolbutamide poor metabolizer (3);Warfarin sensitivity, 122700 (3).
VDRC has 2 RNAi stocks for FBgn0038005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 1.20None
Head4 ± 20 of 4 0.80None
Eye6 ± 12 of 4 1.30None
Thoracicoabdominal ganglion9 ± 14 of 4 1.90None
Salivary gland7 ± 20 of 4 1.62None
Crop6 ± 11 of 4 1.40None
Midgut6 ± 10 of 4 1.30None
Tubule7 ± 01 of 4 1.50Up
Hindgut4 ± 10 of 4 1.00None
Heart2 ± 11 of 4 0.51None
Fat body8 ± 12 of 4 1.73Up
Ovary1 ± 00 of 4 0.30Down
Testis5 ± 01 of 4 1.10None
Male accessory glands8 ± 20 of 4 1.70None
Virgin spermatheca4 ± 10 of 4 0.84None
Mated spermatheca6 ± 00 of 4 1.25None
Adult carcass17 ± 01 of 4 3.50Up
Larval CNS9 ± 14 of 4 1.91Up
Larval Salivary gland4 ± 10 of 4 0.82None
Larval midgut8 ± 10 of 4 1.65None
Larval tubule2 ± 00 of 4 0.50Down
Larval hindgut1 ± 00 of 4 0.27Down
Larval fat body8 ± 11 of 4 1.80Up
Larval trachea374 ± 384 of 476.75Up
Larval carcass11 ± 13 of 4 2.34Up
S2 cells (growing)5 ± 11 of 4 1.13None
Whole fly4 ± 00 of 4

Looking for CG15807-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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