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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15812-RA through 18771 annotations produced 1 hits



piefke (pfk):

Annotation Number : CG15812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035405
Gbrowse : chr3L:3159994-3162019 (+) // 99.74 //
Probeset : 1622998_a_at
Accessions : protein= NP_523897; /// NP_728817;, nucleotide= NM_079173; /// NM_167991;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005700 // polytene chromosome // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0035405.
BioGrid reports that CG15812 interacts with CG5738 .
TRiP has 3 RNAi stocks for FBgn0035405 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035405 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 24 of 4 0.80Down
Head62 14 of 4 0.50Down
Eye44 24 of 4 0.33Down
Thoracicoabdominal ganglion76 14 of 4 0.60Down
Salivary gland49 44 of 4 0.36Down
Crop60 14 of 4 0.40Down
Midgut53 34 of 4 0.40Down
Tubule50 14 of 4 0.40Down
Hindgut50 34 of 4 0.40Down
Heart33 14 of 4 0.25Down
Fat body43 44 of 4 0.32Down
Ovary300 54 of 4 2.20Up
Testis71 34 of 4 0.50Down
Male accessory glands65 24 of 4 0.50Down
Virgin spermatheca54 54 of 4 0.40Down
Mated spermatheca63 34 of 4 0.47Down
Adult carcass49 34 of 4 0.40Down
Larval CNS158 94 of 4 1.17Up
Larval Salivary gland90 24 of 4 0.66Down
Larval midgut44 14 of 4 0.33Down
Larval tubule39 24 of 4 0.30Down
Larval hindgut53 24 of 4 0.39Down
Larval fat body29 44 of 4 0.20Down
Larval trachea67 74 of 4 0.50Down
Larval carcass54 34 of 4 0.40Down
S2 cells (growing)104 34 of 4 0.77Down
Whole fly135 24 of 4

Looking for CG15812-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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