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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15817-RB through 18771 annotations produced 1 hits



(CG15817):

Annotation Number : CG15817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028476
Gbrowse : chr3R:25054887-25060886 (+) // 100.0 //
Probeset : 1633233_a_at
Accessions : protein= NP_651687; /// NP_733282;, nucleotide= NM_143430; /// NM_170403;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0028476.
BDGP gene expression has embryonic in situ data for BcDNA:LD22910: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0028476 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028476 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain337 134 of 4 1.90Up
Head156 124 of 4 0.90None
Eye136 64 of 4 0.78Down
Thoracicoabdominal ganglion298 24 of 4 1.70Up
Salivary gland135 94 of 4 0.77Down
Crop230 74 of 4 1.30Up
Midgut285 174 of 4 1.60Up
Tubule146 114 of 4 0.80Down
Hindgut139 14 of 4 0.80Down
Heart86 74 of 4 0.50Down
Fat body126 224 of 4 0.72Down
Ovary394 74 of 4 2.30Up
Testis27 14 of 4 0.20Down
Male accessory glands92 24 of 4 0.50Down
Virgin spermatheca194 244 of 4 1.11None
Mated spermatheca151 104 of 4 0.87None
Adult carcass87 24 of 4 0.50Down
Larval CNS259 394 of 4 1.48Up
Larval Salivary gland152 44 of 4 0.87Down
Larval midgut168 194 of 4 0.96None
Larval tubule52 34 of 4 0.30Down
Larval hindgut148 64 of 4 0.85Down
Larval fat body125 44 of 4 0.70Down
Larval trachea132 94 of 4 0.76Down
Larval carcass155 74 of 4 0.89None
S2 cells (growing)100 64 of 4 0.58Down
Whole fly174 64 of 4

Looking for CG15817-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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