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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15825-RB through 18771 annotations produced 1 hits



CG15825 (fon):

Annotation Number : CG15825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032773
Gbrowse : chr2L:19383213-19386202 (-) // 100.0 //
Probeset : 1626473_a_at
Accessions : protein= NP_001163013; /// NP_609959; /// NP_724177;, nucleotide= NM_001169542; /// NM_136115; /// NM_165287;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0032773.
BDGP gene expression has embryonic in situ data for CG15825: 15 pix of staining in 2 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 154 of 4 0.20Down
Head1684 534 of 4 2.70Up
Eye1094 1654 of 4 1.77None
Thoracicoabdominal ganglion116 134 of 4 0.20Down
Salivary gland40 93 of 4 0.07Down
Crop105 104 of 4 0.20Down
Midgut11 11 of 4 0.00Down
Tubule128 383 of 4 0.20Down
Hindgut225 124 of 4 0.40Down
Heart3043 1884 of 4 4.94Up
Fat body4042 3074 of 4 6.56Up
Ovary3 10 of 4 0.00Down
Testis84 34 of 4 0.10Down
Male accessory glands10 30 of 4 0.00Down
Virgin spermatheca4718 1254 of 4 7.65Up
Mated spermatheca4866 1954 of 4 7.89Up
Adult carcass2264 1544 of 4 3.70Up
Larval CNS12 32 of 4 0.02Down
Larval Salivary gland611 464 of 4 0.99None
Larval midgut23 64 of 4 0.04Down
Larval tubule81 154 of 4 0.10Down
Larval hindgut853 1564 of 4 1.38None
Larval fat body9446 9744 of 415.30Up
Larval trachea340 3294 of 4 0.55None
Larval carcass303 694 of 4 0.49Down
S2 cells (growing)179 54 of 4 0.29Down
Whole fly616 504 of 4

Looking for CG15825-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime