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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15829-RA through 18771 annotations produced 1 hits


(CG15829):

Annotation Number : CG15829
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035743
Gbrowse : chr3L:7122051-7122374 (+) // 100.0 //
Probeset : 1633251_at
Accessions : protein= NP_648082;, nucleotide= NM_139825;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // inferr
FlyMine data for FBgn0035743.
VDRC has 1 RNAi stocks for FBgn0035743 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 20 of 4 0.00Down
Head4 ± 20 of 4 0.00Down
Eye7 ± 30 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.09Down
Crop9 ± 20 of 4 0.10Down
Midgut1981 ± 1014 of 415.40Up
Tubule7 ± 10 of 4 0.10Down
Hindgut63 ± 204 of 4 0.50None
Heart3 ± 10 of 4 0.02Down
Fat body9 ± 60 of 4 0.07Down
Ovary6 ± 10 of 4 0.00Down
Testis15 ± 12 of 4 0.10Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.02Down
Mated spermatheca4 ± 10 of 4 0.03Down
Adult carcass5 ± 30 of 4 0.00Down
Larval CNS6 ± 61 of 4 0.05Down
Larval Salivary gland8 ± 10 of 4 0.06Down
Larval midgut5684 ± 2084 of 444.19Up
Larval tubule17 ± 51 of 4 0.10Down
Larval hindgut928 ± 1044 of 4 7.22Up
Larval fat body15 ± 31 of 4 0.10Down
Larval trachea32 ± 422 of 4 0.25Down
Larval carcass8 ± 20 of 4 0.07Down
S2 cells (growing)6 ± 10 of 4 0.05Down
Whole fly128 ± 304 of 4

Looking for CG15829-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime