FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG15835-RA through 18771 annotations produced 1 hits

CG15835 (Kdm4A):

Annotation Number : CG15835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033233
Gbrowse : chr2R:3810279-3812488 (-) // 99.7 //
Probeset : 1635774_at
Accessions : protein= NP_610331;, nucleotide= NM_136487;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : "0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activi
FlyMine data for FBgn0033233.
BDGP gene expression has embryonic in situ data for CG15835: 10 pix of staining in 8 body parts.
Homophila reports that CG15835 is a close match (2e-29) to human gene DXS1272E;JARID1C;MRXSJ;SMCX;XE169 (NP_004178), a gene associated with Mental retardation, X-linked, syndromic, JARID1C-related, 300534 (3).
TRiP has 1 RNAi stocks for FBgn0033233 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033233 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	54 ± 2	4 of 4	0.40	Down
Head	27 ± 2	3 of 4	0.20	Down
Eye	61 ± 1	4 of 4	0.51	Down
Thoracicoabdominal ganglion	45 ± 2	4 of 4	0.40	Down
Salivary gland	27 ± 5	0 of 4	0.23	Down
Crop	32 ± 0	4 of 4	0.30	Down
Midgut	26 ± 4	0 of 4	0.20	Down
Tubule	48 ± 5	4 of 4	0.40	Down
Hindgut	22 ± 2	3 of 4	0.20	Down
Heart	39 ± 3	4 of 4	0.32	Down
Fat body	27 ± 5	0 of 4	0.23	Down
Ovary	311 ± 5	4 of 4	2.60	Up
Testis	218 ± 1	4 of 4	1.80	Up
Male accessory glands	89 ± 4	4 of 4	0.70	Down
Virgin spermatheca	53 ± 3	4 of 4	0.44	Down
Mated spermatheca	75 ± 10	4 of 4	0.62	Down
Adult carcass	21 ± 4	0 of 4	0.20	Down
Larval CNS	76 ± 4	4 of 4	0.63	Down
Larval Salivary gland	55 ± 4	4 of 4	0.46	Down
Larval midgut	20 ± 2	2 of 4	0.16	Down
Larval tubule	42 ± 1	4 of 4	0.40	Down
Larval hindgut	36 ± 2	4 of 4	0.30	Down
Larval fat body	51 ± 11	2 of 4	0.40	Down
Larval trachea	65 ± 7	4 of 4	0.54	Down
Larval carcass	29 ± 2	0 of 4	0.24	Down
S2 cells (growing)	52 ± 1	4 of 4	0.43	Down
Whole fly	121 ± 3	4 of 4

Looking for CG15835-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720