FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1584-RA through 18771 annotations produced 1 hits

Origin recognition complex subunit 6 (Orc6):

Annotation Number : CG1584
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023180
Gbrowse : chr2R:5732956-5733964 (-) // 100.0 //
Probeset : 1627090_at
Accessions : protein= NP_477319;, nucleotide= NM_057971;
Pathway : 0000808 // origin recognition complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic a
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0023180.
BDGP gene expression has embryonic in situ data for Orc6: 12 pix of staining in 8 body parts.
BioGrid reports that CG1584 interacts with CG7041 CG9573 CG3629 CG11802 CG1120 CG4552 CG8676 CG8841 .
VDRC has 2 RNAi stocks for FBgn0023180 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 1	4 of 4	0.20	Down
Head	13 ± 0	2 of 4	0.10	Down
Eye	7 ± 1	2 of 4	0.06	Down
Thoracicoabdominal ganglion	30 ± 1	4 of 4	0.20	Down
Salivary gland	15 ± 2	0 of 4	0.12	Down
Crop	14 ± 2	3 of 4	0.10	Down
Midgut	26 ± 3	4 of 4	0.20	Down
Tubule	14 ± 0	1 of 4	0.10	Down
Hindgut	13 ± 1	3 of 4	0.10	Down
Heart	12 ± 1	3 of 4	0.10	Down
Fat body	18 ± 3	0 of 4	0.14	Down
Ovary	274 ± 4	4 of 4	2.10	Up
Testis	3 ± 0	0 of 4	0.00	Down
Male accessory glands	6 ± 1	0 of 4	0.00	Down
Virgin spermatheca	12 ± 1	0 of 4	0.10	Down
Mated spermatheca	10 ± 0	0 of 4	0.08	Down
Adult carcass	19 ± 2	1 of 4	0.10	Down
Larval CNS	120 ± 8	4 of 4	0.90	None
Larval Salivary gland	33 ± 3	4 of 4	0.25	Down
Larval midgut	18 ± 0	2 of 4	0.14	Down
Larval tubule	20 ± 0	3 of 4	0.20	Down
Larval hindgut	26 ± 2	4 of 4	0.20	Down
Larval fat body	13 ± 2	0 of 4	0.10	Down
Larval trachea	45 ± 1	4 of 4	0.34	Down
Larval carcass	28 ± 4	4 of 4	0.21	Down
S2 cells (growing)	79 ± 6	4 of 4	0.60	Down
Whole fly	133 ± 8	4 of 4

Looking for CG1584-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720