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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15845-RA through 18771 annotations produced 1 hits



Adh transcription factor 1 (Adf1):

Annotation Number : CG15845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000054
Gbrowse : chr2R:2549773-2555592 (+) // 100.0 //
Probeset : 1636020_s_at
Accessions : protein= NP_724481; /// NP_724482; /// NP_995750;, nucleotide= NM_165479; /// NM_165480; /// NM_206028;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor acti
FlyMine data for FBgn0000054.
BDGP gene expression has embryonic in situ data for Adf1: 32 pix of staining in 17 body parts.
BioGrid reports that CG15845 interacts with CG15845 CG18675 CG32029 CG6607 CG7239 CG2944 CG5516 CG8159 .
TRiP has 2 RNAi stocks for FBgn0000054 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain629 94 of 4 1.70Up
Head352 94 of 4 1.00None
Eye381 144 of 4 1.06None
Thoracicoabdominal ganglion399 94 of 4 1.10None
Salivary gland450 84 of 4 1.25Up
Crop326 134 of 4 0.90None
Midgut198 104 of 4 0.50Down
Tubule228 194 of 4 0.60Down
Hindgut247 44 of 4 0.70Down
Heart167 64 of 4 0.46Down
Fat body156 84 of 4 0.43Down
Ovary603 104 of 4 1.70Up
Testis135 64 of 4 0.40Down
Male accessory glands332 114 of 4 0.90None
Virgin spermatheca238 144 of 4 0.66Down
Mated spermatheca259 294 of 4 0.72Down
Adult carcass185 114 of 4 0.50Down
Larval CNS633 414 of 4 1.76Up
Larval Salivary gland456 74 of 4 1.27Up
Larval midgut152 114 of 4 0.42Down
Larval tubule249 34 of 4 0.70Down
Larval hindgut232 94 of 4 0.64Down
Larval fat body187 104 of 4 0.50Down
Larval trachea415 444 of 4 1.15None
Larval carcass184 244 of 4 0.51Down
S2 cells (growing)414 194 of 4 1.15None
Whole fly360 154 of 4

Looking for CG15845-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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