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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15848-RA through 18771 annotations produced 1 hits


calcium biding protein (Scp1):

Annotation Number : CG15848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020908
Gbrowse : chr2RHet:1707795-1742162 (-) // 99.58 //
Probeset : 1625433_at
Accessions : protein= NP_001015389;, nucleotide= NM_001015389;
Pathway : 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0020908.
BDGP gene expression has embryonic in situ data for Scp1: 4 pix of staining in 1 body parts.
BioGrid reports that CG15848 interacts with CG5700 CG9610 .
TRiP has 1 RNAi stocks for FBgn0020908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.00Down
Head99 ± 64 of 4 0.00Down
Eye15 ± 24 of 4 0.01Down
Thoracicoabdominal ganglion106 ± 354 of 4 0.00Down
Salivary gland17 ± 31 of 4 0.01Down
Crop16 ± 33 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule6 ± 11 of 4 0.00Down
Hindgut11 ± 22 of 4 0.00Down
Heart12 ± 23 of 4 0.01Down
Fat body45 ± 114 of 4 0.02Down
Ovary14 ± 14 of 4 0.00Down
Testis24 ± 04 of 4 0.00Down
Male accessory glands11 ± 41 of 4 0.00Down
Virgin spermatheca9 ± 32 of 4 0.00Down
Mated spermatheca9 ± 23 of 4 0.00Down
Adult carcass5450 ± 3424 of 4 2.30Up
Larval CNS5 ± 13 of 4 0.00Down
Larval Salivary gland10 ± 03 of 4 0.00Down
Larval midgut11 ± 22 of 4 0.00Down
Larval tubule7 ± 22 of 4 0.00Down
Larval hindgut8 ± 13 of 4 0.00Down
Larval fat body15 ± 34 of 4 0.00Down
Larval trachea15 ± 24 of 4 0.01Down
Larval carcass9 ± 14 of 4 0.00Down
S2 cells (growing)7 ± 03 of 4 0.00Down
Whole fly2407 ± 2164 of 4

Looking for CG15848-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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